WGS of Apostasia shenzhenica: 10000 insert size - SRA

SRX2959217: WGS of Apostasia shenzhenica: 10000 insert size
1 ILLUMINA (Illumina HiSeq 2000) run: 23.3M spots, 4.2G bases, 3.2Gb downloads

Design: 10000 insert size library on Illumina

Submitted by: The National Orchid Conservation Center of China

Study: Apostasia shenzhenica isolate:ASH160606 Genome sequencing and assembly

PRJNA310678 • SRP109877 • All experiments • All runs

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Apostasia shenzhenica has a karyotype of 2N=2X=68 with uniform small-size chromosomes . To completely sequence A. shenzhenica genome, we generated a total of 80.02 Gb of raw reads, with multiple insert libraries ranging in size from 180 bp to 20 Kb. A K-mer analysis estimated the genome size of A. shenzhenica at 471.0Mb. We assembled the sequence using Allpaths-lg (49292) software. The total length of the assembly was 348Mb (scaffold N50 1.196 Mb in length; corresponding contig N50 length 30.1 Kb).

Sample:

SAMN04453324 • SRS2316248 • All experiments • All runs

Organism: Apostasia shenzhenica

Library:

Name: Apostasia10000

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 23.3M spots, 4.2G bases, 3.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR5759396	23,315,683	4.2G	3.2Gb	2017-06-27

ID:: 4221570

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